If you are really trunking, we shouldn't be talking about a frequency....
What kind of radio are you using?
What talk group(s) is this/are activity on (the digits, not the name)?
Is you are really trunking and have only programmed the trunking frequencies, your radio may stop on one or more talk groups that have data signals like MOSCAD which is data being sent to mobile data terminals or station printers, etc. The other possibility would be an encrypted channel. In either of these cases, locking out the TG in question while in trunking mode is the right thing to do.
Depending on the type of scanner, if you lock out an actual frequency, you could miss conversations. If the radio you are using has a "control-channel only" mode, then the only frequencies needed by the scanner are the control channel frequencies.