Antennas on trunk.
Just put one scanner antenna in the middle, one on the side and the CB antenna opposite side of the trunk. As much physical separation as possible.
Next to each other, you could have problems with your scanner as others have said. If you get too much attention on the "antenna array" on your trunk, see below:
It may be hard to see in my picture, but on the far left is a VHF antenna, UHF "Phantom" antenna and a GPS antenna right next to each other. I got tired of local law enforcement pulling me over to see "who did your antenna install" as many of their vehicles have 3 foot whips bouncing around on them. I had the antennas spaced out to work better, but they ended up calling a lot more attention than I wanted.
They work very well right next to each other, and have very minimal loss. (VHF range is about 12 miles, and UHF is about 8-9.) The window antenna mount seen is the old On-Star mount, and the four on the roof were for direction finding that day, those are not left on the car.