The scanner refreshes internal memory variables and stuff approximately every 2 seconds. IIRC it's related to the data from the control channel (active transmission data, SysID, site ID, etc.) being broadcast in an endless loop, and the refresh happens at the beginning/end of the data loop. That's why everything but the frequency blinks periodically; the scanner is refreshing the data from the control channel.
Note that most channel data items stop blinking during a voice call--the scanner is not monitoring the control channel while monitoring the voice channel, so the SysID, Site ID, etc "freeze" to whatever value they had when the voice call started.
Note that most channel data items stop blinking during a voice call--the scanner is not monitoring the control channel while monitoring the voice channel, so the SysID, Site ID, etc "freeze" to whatever value they had when the voice call started.