Perfect combination.
Use the top antenna for receive, feed it through a notch filter into to an active amplified receiver multicoupler. (Buy a four-port and terminate the unused ones with a 50ohm dummy load.) The preamp will let you drive the receiver as hard as you need to.
Because the RX freq's are so close you can probably use one filter for both, installed
before the amplifier. All the filter needs to do is pass the 159's and reject anything lower, including the nasty-noisy 158.1 spark-gap paging transmitter that is always nearby.
Mount the new antenna directly below the old one. See this for the distance:
Isolation between the repeater receiver and RF sources
Isolation between the TX and RX should total 90db (more is better). The isolation distance between the antennas is a function of the filtering; the better the filters the closer the antennas can be.
Use a combiner on the transmitters and feed both to the lower antenna. You will probably find that the losses from the receiver side filter have gone away and that offsets the losses through the TX combiner. Check your ERP.
The wizards at the filter builders can give you fine detailed engineering.
LMR600 is not the sharpest knife in the drawer for repeater use, and has a bad habit of drawing water through the jacket and into the shields. If the original antenna has been in the air more then seven years, replace all of the coax with LDF4.5 or LDF5. That will save you countless headaches down the road. Secure the coax every three feet coming down the tower. Ground the coax at the top, every 50 feet, at the bottom before it turns off the tower, and where it enters the shelter/building. R-56 is your friend!