Which MTA Police Pct. and where. Most if not all the current radios both mobile and portable are APX series ( I helped with the planned reprogramming/corrections last spring). In GCT they use the VHF channel of 160.22 C.S., and there is a repeater for the terminal that only goes about a block around it. They also use the P-25 system on the Chrysler building a lot and that is P-25 Phase I. As I mentioned in a post last spring after the reprogramming that there ARE encrypted channels in the radios, and everything that they have right now as digital is P-25 Phase I. When they go on the updated Ct State Police system I believe they will go Phase II as the APX series supports it.
LIRR and Amtrak I have no idea as I never had any dealings with them directly, but maybe they still have the old UHF vehicle repeaters, but I doubt it.