I'm seeing the same thing, rather than listing the control and alts everything is listed as control channels. Is there a reason for this change @blantonl ?
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Based on questions I've seen in the forums, my guess would be that the alternate designation is being eliminated. Apparently too many people have developed the habit of programming only "the red one" and then complaining that the scanner doesn't receive anything (because "the red one" doesn't happen to be active at that moment). By simply marking all control-capable channels as control, and not making a distinction between primary and alternates, there's less confusion.
Another issue is probably that, when a site happens to roll the control channel from primary to alternate, some people submit that and insist that the former primary be changed to alternate and the former alternate be changed to primary; that's a lot of extra unnecessary work for the administrators.
In the end, noting the difference between primary and alternate isn't necessary; as long as all control-capable channels are noted as such and programmed into radios, all will be well.