Yes, that is the issue. If I have say, 4 sites in one system (which is how the system is set up), it will scan through the sites and sometimes miss the one transmitting. If I site hold, no issues. The problem though is that it would be very cumbersome to have to put each site into its own FL, when theyre all part of the same company/system.
The best way I've found to mitigate this problem is to just limit the number of sites as much as possible. Other systems, like P25 and EDACS, or other DMR systems dont seem to have trouble with this