I have had the same issues with NYC-DOITT and Westchester Fire. Apparently with simulcast systems I've noticed that when the system fades in and out that Unitrunker falses and gives bad info, like multiple wrong system ID's windows and even talk group numbers. When I receive a strong signal, I have no problems.
Thanks for the info radioman I appreciate it. That's interesting that you were running into the same issues on the Westchester and NYC-DOITT. I am probably about a mile to two miles away from the airport and surrounded by buildings and concrete so that probably doesn't help.
Just for the heck of it, this evening I reprogrammed the system into my scanner and hooked it up to Unitrunker and don't seem to be having any problems. Its recognizing all the channels right away so have a feeling that it was probably a issues with the settings in my scanner. I thought I had everything set correctly.