ok I would pull out one of your dongles, and then open SDR# tune the control channel and verify that your PPM corrections are still valid. if not open the gear icon and adjust the correction until you are as close to center as possible, not the correction, write it on a piece of tape and stick it to the dongle. then pull out that dongle and insert the other one and repeat the procedure again.
Close SDR and open Unitrunker. open you signal receiver and verify your ppm correction, set the squelch and drift correct for the receiver. hit start and see if it opens your system window. Next insert the other dongle, and make sure it s selected correctly in Unitrunker, again verify that the PPM correction setting matches the tuner, and again set the squelch and drift correction options and start it. verify that it is tuning to the correct channels and then start DSD and see what you get.
That should work for you as long as the receivers are corrected for, and there is nothing wrong with your drivers or the dongles themselves.