Years ago, probably close to 10 or so, one of the CalFire repeaters was putting out amateur traffic - as I recall it was one of the more "racy" LA based 2 meter repeaters too so it certainly got noticed!
I could tell that there was another audio signal at lower volume mixed with the amateur traffic so I knew it was an intermod product.
I did some math and found the other signal that was mixing with the amateur signal to create the product landing right on the CalFire repeater input frequency. I can't recall whether the repeater had CSQ on the input or possibly the CTCSS protection was still getting "falsed" by the mixing product which probably included combo of the two interfering signals' CTCSS tones anyway.
The other signal was, if I recall correctly, some UHF business repeater.
Anywho, I posted about this on this forum and not too long thereafter the issue went away.
I need to dig around to find that old thread but, unless it was deleted, it should be here somewhere.
Of course this current issue may not be due to something similar but...??
Next time it happens, see if you can here another signals' audio at lower volume mixed in with the amateur signal - if you can here something like that it's a pretty sure thing that it's an intermod product.
Of course the other signal might not be analog so might be harder to discern if at very low level.
-Mike