Couple of random thoughts here...
The first thought that comes to my mind is to double-check the tuning on your duplexer. If everything was just transported to a new site, it's possible the duplexer got knocked around a bit and is now off-frequency, which - if it's only got band-reject - could allow the higher-powered transmitter to bother the receiver. You said it happens at different locations - are any of these locations relatively far away?
And while you're tuning the duplexer, might as well double-check the preselector while you've got the gear.
For that matter - it probably wouldn't hurt to double-check the alignment on the radios and the repeater. At least the frequency alignment.
If it's a Quantar, you can connect WinRSS to the repeater, go to the status screen, and have it show you the real-time RSSI (in dBm I think) of the signal on the receiver and I think you can monitor the P25 BER from there as well.
This also reminds me of an issue we had at a 20kw FM transmitter site. I could put a wattmeter on the feed line and read about 2-3 watts coming in from the antenna system. We made a simple stub filter out of rigid coax, tuned to the frequency of the radio station, put it in-line with the feedline with a T-connector. To this day, I can't be sure that it solved the issue we were having because we did more than one thing that day, but I left it in because it's not hurting anything.
These are all educated guesses, hard to troubleshoot something without being there - let us know how things work out.