Answering a couple questions at once...
A long single tone is used by several manufacturers of tone alerting equipment, including Motorola. It is usually used as a group call, where several different pager sets will have a common tone. When this common tone is sent for a longer period of time (such as 8 seconds) it alerts all pagers in the group, even though they have different codes for the other tone. Example: Station 1 uses tones A and B, Station 2 uses tones C and B, and station 3 uses tones D and B. When tone B is sent for 8 seconds it alerts all 3 stations at once.
Cap Codes are a coded number or letter set used to identify the group and individual tones used on a pager. For example, a Motorola Cap Code of 336 tells us that the tones come from a specific group and uses tones 3 and 6 of that group.
As for the 396 and multiple freqs with programmed tone sets, the 396 will only monitor tones on ONE frequency at a time. If you have all 10 slots filled, with 5 tone sets on 154.430, 3 on 154.205 and 2 on 33.70 then the radio will monitor any tone sets on the same freq as selected when you select Toneout mode. So if you select a tone set on 154.430, it will actually monitor all 5 tones programmed on 154.430. (This also requires the mode to be the same/ NFM, FM, Auto.)