As was noted above, on 800; all sites carry the same information (simulcast) so if you were to put in one system (troop B) and just the talkgroup for 2 Com, that would allow you to hear just the north area of the GSP on the system that only covers that area geographically. You would then need the Troop C system and 3 Com loaded just for the central part of the state and then Troop A with 1 Com for the southern section of the state.
I would not worry so much about which sites if you can but more about the 4 control channels being loaded for each system. So what you could perhaps do is just have 1 site loaded with the 4 control channels and just the one talkgroup in 3 separate banks for each area. Call the site whatever you wanted to.
Now for the 700 system they have, yes you would have to get much more detailed placing the frequencies in for the specific sites that would be near the GSP where you are traveling and thats where Radio Reference comes in handy for loading of course and actually it would just be easier to load all the sites in let the scanner find the sites with the strongest signal versus selectively placing only those sites close by. Even though I site home most of the time scanning I just keep all the sites loaded and let the scanner find the strongest signal or in some cases as with 700 the site with the conversation I am tracking which in some cases can appear on a different site than the one I was listening to prior with another talkgroup...thats the nature of multi-site versus simulcast.
But for your situation I would opt to go with the 800 side of NJICS, load the control channels for all 3 systems and load the 3 talkgroups for the regions and then you can lock or unlock the talkgroups as you travel along...or perhaps just leave all 3 talkgroups on so you can hear whats up ahead (or behind you)