I have the tuner that came with the cps. What should i do?
The Tuner software is only part of the picture for aligning the radio. You need a proper, relatively modern service monitor and all the other necessary equipment to properly align the radio. According to Motorola, you need (in addition to CPS and Tuner):
Communications System Analyzer
Digital Multimeter
Code Synthesizer
AC Voltmeter
Dual-Trace Oscilloscope
Wattmeter
Load Resistor
RF Millivolt Meter
SINAD Meter
DC Power Supply
Battery Eliminator
SMA to BNC Adaptor
Chassis Opener Tool
Housing Eliminator Test Fixture
USB Test Set Cable (or RS-232 Test Set Cable)
Portable Test Box
A modern service monitor ("Communication System Analyzer") will have several of these things built in, and you don't absolutely have to have all of those things (for example, the Chassis Opener Tool and Housing Eliminator Test Fixture aren't needed for a normal alignment).
If you don't have the necessary stuff,
and know what you're doing, you should really take it to a Motorola shop to have it aligned. Getting in there and messing around without the proper equipment and knowing what you're doing can make things
much worse.