Use What You Have
Jordan, just use your Yaesu FT3D and your Arrow II antenna and you'll be fine. If you don't want to use your FT3D, the 65R may work, but I do not own one to test the meter. I have zero complaints about using a digital graph/bar meters for a T-Hunt, as long as they work to show some sort of scale. The UV5R meter is junk as you realized. The UV5R I own is all or nothing.
What I Use
For transmitter hunts I typically use an old Yaesu VR-500 receiver and an Elk Log Periodic. That Yaesu has a digital meter along with an attenuation option. It is an older receiver, but it works fine for me. Don't buy one though. You're probably better off trying the 65R if it is in stock, or use what you have with the FT3D.
Attenuation
Besides the built-in attenuation, slightly dialing off of the main frequency to add attenuation without having to enable it is rather quick and easy. I do this first and sometimes never enable the attenuation. If I am dialed rather far off the main frequency, I am probably close enough at that point to receive the transmitter on the third harmonic frequency. ( If the T-Hunt frequency is 146.565 MHz, the third harmonic is 439.695 MHz )
Full Disclosure: I have successfully used a UV5R on a T-Hunt. The meter on mine was all or nothing, so I did it by ear. I tuned to the main hunt frequency and slowly spun in a circle. As I got closer and closer I turned the VFO progressively off frequency to attenuate the signal and kept doing the spin from location to location. Once it was very strong, I switched over to the third harmonic and did the same as before, progressively going off frequency, but once on the third harmonic there shouldn't be much need for that. You're probably on top of it at that point. A T-Hunt by ear works, but some sort of working meter is extremely helpful whether digital or not.
I have enjoyed hunting and putting on T-hunts in years past. Some of them were lowest milage, others were quickest time and some were a combination of the two. Improvement requires practice and RF is a funny thing. During a hunt I thought I figured the location, but the fox was 20 miles away. He was bouncing the signal off the side of a nearby 5000' elevation mountain range using a 20 element Yagi. He was also down in a hole, so to speak, so RF from the sides or back of his antenna was of no help.