Today was the day.
Got the 2 guys up at the tower site to see if we could nail down the interference, and whaddaya know, it would not rear its head. It came across very slightly for just a minute, then gone.
They did test for intermod from the other repeaters and the combiner and all tested great. Swept the coax and antenna, good as well.
We stayed up there for a good hour waiting to catch any of the transmissions and couldn't get anything at all.
So for now, all is good. If it keeps getting as bad as it was, the only thing we came up with is to apply for a new pair of frequencies.