I believe I have a workaround for the conventional DMR Slot 2 issue.
I programmed my "test system" in as a trunked DMR system instead of conventional. One frequency, proper color code, and appropriate talkgroups.
I can confirm that in this manner Slot 2 is appearing and working fine, regardless of the status of Slot 1.
Jeff of Hamstation advises me that this was the way conventional DMR had to be programmed before the firmware upgrade, but I got my TRX-1 after the newest firmware so never tried this until now. It does appear to be a viable workaround until Whistler fixes the problem.