If you are hearing digital sounding traffic on an analog scanner, but nothing on the XTS (if properly flashed for digital), then chances are those transmissions are encypted. If they are, then there is nothing you can do about that to monitor it.
Also, if this is a SmartZone system, you will ONLY hear talkgroups on your local tower if there is a radio affliated to that tower. If everyone's radio is on Channel 1 and affiated on tower A, then you will not hear anything on any other tower until a radio on channel 1 moves into that area. Some talkgroups may be setup as "system wide" were they will always be present, but that takes up system resources and are usually reservered for emergency commuications.
Also, for all you Motorola users, DO NOT SET YOUR RADIO FOR SMARTZONE!!!!!!
Again, let me say....
DO NOT SET YOUR RADIO UP FOR SMARTZONE OR AUTO AFFILATION!!!!
The reason is that if you do, everytime you turn your radio on or to a trunked talkgroup, it WILL transmit onto the system. The problem is that if your ID matches an authorized user's ID, it will log both radio's off and the controller will most likely send a radio kill command rendering it useless. In addition, if the system admin enabled the security features, if your radio transmits an ID that the system doesn't know about, again the controller may send a kill command.
Unless you know how to properly setup a trunking radio, I highley suggest selling it and getting a scanner if that's all your going to use it for. Its just a safety thing for everyone. The wrong settings can create serious havoc on a trunking system. Also with a scanner, you will be able to hear any PC's and undocumented talkgroups. You can only scan a max of 10 talkgroups, or 16 conventional channels at a time with a Motorola radio.